So of course i didn't read all of the steps in the new jailbreak process and updated before i was able to create the custom ispw. Now is there any way i can load a custom firmware 3.1 from somewhere else to get the jailbreak back?
Uh what kind of phone do you have? You can use pwnage tool to make a custom IPSW to restore the phone to (not for iphone 3Gs). Or you can download a custom IPSW from Teh Interwebs.