This is not ment to be argumentative, but the purpose of Winclone is to restore a Windows partition. Of course you need a backup created. So if the goal is to recreate the Bootcamp partition, unless there is something I'm not understanding, and I've not tried it, but after Bootcamp creates the partition, if you have a Winclone copy of your Windows partition, I don't know why you could not reinstall Windows with your programs, preferences, and settings intact using Winclone? My question is what was causing this heating problem, and how does a reinstall of the bootcamp partition fix it, and is the source of the issue, the partition or something in the Windows install? If it is the Windows install, then using Winclone, might not resolve it.
Let's try this again.
I used 2 different ISOs. Windows 8 and 7. I started having issues after I installed the new Boot Camp drivers on top of the old ones. I tried a lot of things including reinstalling Windows more than once.
The partition was already there.
I created the install disc (USB stick) with Boot Camp
Rebooted MBP
Hold Option
Selected the USB stick
Formatted the already existant Windows partition
Installed
Issue still there.
Tried again with Windows 7. Same.
Tried again with Windows 8. Same.
Tried one last time with Windows 7. Same.
One thing I hate is when a machine gets the best of me so I wanted to try one more time.
I decided to use Boot Camp to remove the Windows partition, created a Windows 8 install disc again (using the same ISO as before).
Redownloaded the drivers to the same USB stick as the ISO
Instead of rebooting and holding the Option key, I just told Boot Camp to start installing after recreating a Windows parition again.
This time, no issues. Same apps, same configurations, same games, same drivers, different method.
Now, how do you want me to tell you that a Winclone image will solve it if I didn't try it? I'm just telling you that, considering my experience, it probably won't help because only a fresh install in a very specific way did the job. And that's it.
If you read the post where I explain it, you'll notice that there's a footnote at the end explaining that probably, the heat issues will still be there but MY problem was gone that way. The thing with my issue was that FPS were high (59/60 FPS running FIFA 13) but the game was choppy. And all games were like this. Even after reinstalling. Only when I reinstalled the way I did the last time, the problem was gone. Why? I don't know. I just know that, for me, it worked.