Restored, various Cydia app settings remained....
Great software by the way!...
So I tried iLEX R.A.T. (1.10-125), both options and neither completely removed all traces of Cydia app settings and reg keys. I also tried iLEX RESTORE (1.1.33), both options, Restore 1 & 2 with the same results, traces of various Cydia app settings and reg keys remained. Any suggestions on a cleaner wipe would be greatly appreciated. (Manual folder deletion? not sure which ones...) This happens on a new iPhone setup and a restore from backup.
Some of the Cydia apps settings and reg keys that remained after restoring (biteSMS, CallBar, FolderEnhancer, Iconoclasm, iBlacklist, Mail Enhancer Pro iOS 6, SBSettings, MyWi 6, IntellilD, iFile, and Cyntact)
Hardware = iPhone 5 (MD644LL/A)
iOS = 6.1 (My Restore Profile has been jail broken since iPhone 3GS)
On a side note, I also ran into an issue when iLEX completed a restore. If the Passcode lock function was left on prior to the restore completing with iLEX. The initial setup would bypass a few menu options (language selection and country selection) in turn I didn't have an option to select a restore from icloud or desktop. Only after multiple restore tries, I finally figured out to turn off the Passcode lock feature and all was good!