I had exactly the same problem , some music files gone with the jpegs in place
there is something strange going on here
Luckily for me I always have 2 backups , one onsite with time machine and one offsite with rsync
in this case I would have been screwed relying on time machine
no matter where I look on the backup drive , oldest back to newest backup , everywhere are the same files missing
now I formatted the backup drive and made the backup again from scratch and everything seems fine again