Pre-existing bootcamp on HDD, Mavericks on SSD

Say I have an HDD with 10.6.8 and I put a Win7 bootcamp partition/install on it.

Then let's say I do a clean install of Mavericks on on an SSD, with a Time Machine migration.

Will the pre-existing bootcamp work, since it's on a different physical disk?


My Current configuration:
Early 2011 MBP
HDD in Original Bay.
SSD in Opti-bay.
(Currently) Single boot to 10.6.8



My Goal:
SSD in Optibay: Mavericks
HDD in Mainbay:
Keep 10.6.8
Keep Bootcamp Windows 7


I have another post on this, but I'm trying to separate the Mavericks install issues from the bootcamp issues.

Thanks for reading and for helpful suggestions.

Ok - thanks for the tip on the BCD.

Quad5ny, can I ask one more thing,
Do you know if OSX has a similar proclivity to where it's originally installed?

Years ago, I cloned my HDD 10.6 install to my SSD, and it led to unusually long shutdown times, I could only solve it by doing a fresh install directly to the SSD. I assumed the problem was something similar to the hardware configuration of the original install.