I had this problem with the betas but figured it would be taken care of in the public release, but no go. I have a new Mac Pro with 4x30" ACDs and all work perfectly in 10.9.2. However when updating to 10.9.3, it only allows 2 displays to be displayed, and only 2 show up in system preferences. What a pain. I restored from Time Machine back to 10.9.2 and all is well. Kinda stinks that I can't be updated though. Any ideas?