I didn't realize anyone other than pilots even cared about WAAS. We need it in order to use GPS in a precision approach to land, but I don't know if it is worth paying extra for it in any ground-based application.
It does use battery faster than GPS without, so the odds are Apple didn't add it into the iPhone. They count on their WiFi assist and cell tower triangulation to do their differential GPS. So if you want the added accuracy of WAAS you will probably have to pay the extra for it on your sonar. If your sonar is tied to the boat's electrical system the extra battery drain issue goes away, too.