Alright, so I managed to get it working.
If you read official Apple' support page
https://support.apple.com/en-us/HT202856, you won't find there Mid2014 13" MBPr in the list of laptops that are capable of outputting 4K @ 60 Hz via SST.
That's actually the limitation of hardware, and if being more exactlimitation of 'U' line of Intel Haswell processors. That's why there is no such problems on 15" MBPrs, even on models without dedicated GeForce card, and that's why there is no such problem on latest Early2015 13" MBPr.
So, maximum what you can get on Mid2014 13" MBPr is 3840*2160 @ 51 Hz.
Buy or download SwitchResX, and add a custom resolution of 3840x2160. Use simplified settings and make sure that each and every number in there looks exactly like on attachment.
After saving and rebooting OS X will automatically apply it, and will enable Retina scaling (x2).