I have another problem here. I converted my videos to iPod mp4 format. Now when they're in iTunes, I can't put them onto my iPod without converting them to iPod format in iTunes. That process takes the same amount of time as handbrake. Is it supposed to be done this way, or are my videos supposed to be ready to put on an iPod after being converted in handbrake?
Also, the iPhone preset uses H.264 codec. Would it be bad if I just changed it to MPEG-4?