I've been using my iPad mini to take notes for school and personal stuff for almost two months now, and these are the apps of tried and use now:
- I use Evernote to keep my personal journal, as well as to store general lists of things I want to remember.
- For handwritten notes for class, I'll use UPAD. While the interface isn't the best, and it could use a better app icon, it's still pretty nice. I like that you can use handwriting as well as input text into text boxes and highlight stuff. The zoom feature for handwriting is also really nice and get can very small so you can write compactly. I like that you can upload your own photos to use as the paper material you want to write on. And of course, it also supports PDFs so you can upload them into UPAD and highlight stuff or write on them.
- I tried using Penultimate to write handwritten notes, but it's almost useless because there's no zoom feature, so you're forced to write large. You also can't upload PDFs.
- I also purchased Noteshelf and tried using it, because I think the interface is superior to UPAD, but there were several things I didn't like about it. I felt that the zoom box was too large, so you couldn't write as small as you could in UPAD, and you also can't load up PDFs to write on them.
- I also tried Notes Plus, but I absolutely hate the typefaces they used in all of the menus in the app. It looks so old and amateur. And the interface is extremely confusing.
- Also tried Goodnotes, which has a pretty interface. Like Noteshelf, I wish the zoom box was able to get smaller. You're also limited to the colors of pen you can use, whereas it's virtually unlimited in UPAD.
- The stylus i've been using is the Maglus stylus. It was kind of pricey and it took a while for me to receive it after placing my order, but it's a really good stylus. I like that it's magnetic, and the tip is rubber, but it is still very firm compared to the stylus I had before it (Nataal), and so it's easy to write with. I'm kind of interested in getting some sort of hand guard though, so that I can drag my arm against the iPad screen without it interfering with my handwriting.