Well, I live in Portugal and I can only call Apple on Monday but, meanwhile, I've downloaded and applied this
APM script (
http://mckinlay.net.nz/hdapm/) and the noise it's pretty much gone.
I get the clicking sound (
http://youtu.be/kt6asKkMJq0) but only very rarely and (when it happens) it's a lot quieter than it used to be. I reckon the script solved the issue and, now, it's just the normal sound of a solid HDD... I wouldn't even care about it if wasn't for before. Maybe in the future Apple will release a firmware and address this hickup.