Assuming that Snow Leopard is able to successfully use the GPU to enhance central processing tasks, which is one of its goals with the use of OpenCL, the 2.4 GHz model is in some ways a better performer. This is because the 900 MHz clock speed difference could very well be equalized by OpenCL and the 2.4 GHz model will certainly have higher graphical performance. However, I would argue that other than the OpenCL benefits, typical use will not benefit from having a dedicated GPU. Gaming and 3D modeling are basically all that would benefit from that. If you never get Snow Leopard, a 2.53 GHz computer will run faster than a 2.4 GHz computer no matter which video cards they have outside of any gaming or modeling application.
With that said, if there is no real chance of you doing much video gaming or other GPU intense activities, there is a chance that some day you might want to upgrade to 8 GB of RAM which the 2.4 cannot accommodate.
Also consider that the 2.4 GHz model has an ExpressCard/34 slot. This is something that some professionals (such as audio) might prefer to the SD card slot of the 2.53 GHz model. But if external sound cards, eSATA hard drives and the like are not something you would use, it might be more convenient to have a built in SD card reader.
The refurbished computer would likely have 2 GB of RAM, so you'll have to spend
$65 on newegg.com to purchase the memory. Installation is pretty simple, but that does make the refurbished model either $65 more expensive or, if you don't upgrade, slower.
Lastly, the 2.4 GHz model has an access panel to a 5 hour lithium ion battery and the hard drive. While this makes it possible to switch batteries or hard drives without removing the 8 assembly screws, consider realistically if this is important. Most people do not ever get an extra battery, and when you do replace either the battery or hard drive it is painless on either model, so the 1000 cycle, 7 hour battery might be the better choice there.