1. Boot from the cloned backup
2. Open disk utility and erase the internal drive (make sure you are "erasing" the ENTIRE drive, not just a partition ON the drive). Make sure "show all devices" is selected in the popup in disk utility (it's on the upper left)
3. I suggest Mac OS extended with journaling enabled, GUID partition format (that's "HFS+" instead of APFS)
4. Once the erase is done, you might run "first aid" on the newly-erased drive, just to check it out.
5. Then, re-open CCC and "re-clone" your backup BACK TO the internal drive. If CCC offers to clone the recovery partition as well, do so.
6. The first time you reboot to the internal drive, hold down the option key at boot until the startup manager appears. Re-select your internal drive, and hit return.
7. Do you get a good boot?
8. If yes, open the startup disk preference pane, enter your password, and RE-DESIGNATE the internal as the boot drive. (as far as the Mac is concerned, it's booting from "a new drive" and it has to be designated as such).