Yup, virtually any time you turn encryption on, the disk will be converted to apfs. I filed this as a bug starting back with the 10.13 betas. It was closed and marked "works as expected." I followed up with a feature request suggesting that it should prompt the user before conversion, giving them a chance to cancel if the conversion is not consistent with their expectation. That one has been open and remains open in the latest Mojave betas.