Thanks. That's probably what happened. I think Paragon NTFS for mac had the drive unlocked and disk repair messed it up.
Here is a log and it does show that some data was deleted..
2011-02-12 16:25:31 +0100: Deleting attribute 0x80 . File 0x183ca.
2011-02-12 16:25:31 +0100: File "5. Views, Drawing, and Animation (January 19, 2010).mp4" does not contain data attribute
2011-02-12 16:25:31 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:25:31 +0100: Deleting attribute 0x80 . File 0x183cb.
2011-02-12 16:25:31 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x183cb.
2011-02-12 16:25:31 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x183ce.
2011-02-12 16:25:31 +0100: Deleting attribute 0x80 . File 0x183ce.
2011-02-12 16:25:32 +0100: File "6. Designing iPhone Applications, Model-View-Controller, View C" does not contain data attribute
2011-02-12 16:25:32 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:25:32 +0100: Deleting attribute 0x80 . File 0x183d8.
2011-02-12 16:25:32 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x183d8.
2011-02-12 16:25:32 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x183da.
2011-02-12 16:25:32 +0100: Deleting attribute 0x80 . File 0x183da.
2011-02-12 16:25:32 +0100: File "Really Achieving Your Childhood Dreams.m4v" does not contain data attribute
2011-02-12 16:25:32 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:25:32 +0100: Deleting attribute 0x80 . File 0x18a8a.
2011-02-12 16:25:32 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x18a8a.
2011-02-12 16:25:32 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x18a8c.
2011-02-12 16:25:32 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x18a8d.
2011-02-12 16:25:32 +0100: Deleting attribute 0x80 . File 0x18a8c.
2011-02-12 16:25:32 +0100: Deleting attribute 0x80 . File 0x18a8d.
2011-02-12 16:25:32 +0100: File "01 Uprising.mp3" does not contain data attribute
2011-02-12 16:25:33 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:25:33 +0100: Deleting attribute 0x80 . File 0x1b158.
2011-02-12 16:25:33 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x1b158.
2011-02-12 16:25:33 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x1b1af.
2011-02-12 16:25:33 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x1b3f5.
2011-02-12 16:25:33 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x1b3f8.
2011-02-12 16:25:33 +0100: Deleting attribute 0x80 . File 0x1b1af.
2011-02-12 16:25:33 +0100: Deleting attribute 0x80 . File 0x1b3f5.
2011-02-12 16:25:33 +0100: Deleting attribute 0x80 . File 0x1b3f8.
2011-02-12 16:25:33 +0100: File "91258dc77155306f53dfe84d815fb2a2_0.ddat" does not contain data attribute
2011-02-12 16:25:33 +0100: Fixing corrupt attribute 0x80 in file 0x1b3f3.
2011-02-12 16:25:33 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:25:33 +0100: Deleting attribute 0x80 . File 0x1b3fc.
2011-02-12 16:25:33 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x1b3fc.
2011-02-12 16:25:33 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x1b43c.
2011-02-12 16:25:33 +0100: Deleting attribute 0x80 . File 0x1b43c.
2011-02-12 16:25:33 +0100: File "office 2008 12.0.0 english.dmg" does not contain data attribute
2011-02-12 16:25:39 +0100: Fixing corrupt attribute 0x80 in file 0x214b8.
2011-02-12 16:25:39 +0100: Fixing corrupt attribute 0x80 in file 0x21dbf.
2011-02-12 16:25:39 +0100: Fixing corrupt attribute 0x80 in file 0x21dcd.
2011-02-12 16:25:39 +0100: Fixing corrupt attribute 0x80 in file 0x21dde.
2011-02-12 16:26:09 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:26:09 +0100: Deleting attribute 0x80 . File 0x48b3d.
2011-02-12 16:26:09 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x48b3d.
2011-02-12 16:26:09 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x48b3f.
2011-02-12 16:26:09 +0100: Deleting attribute 0x80 . File 0x48b3f.
2011-02-12 16:26:09 +0100: File "MVI_6630.MOV" does not contain data attribute
2011-02-12 16:26:09 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:26:09 +0100: Deleting attribute 0x80 . File 0x4917f.
2011-02-12 16:26:09 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x4917f.
2011-02-12 16:26:10 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x49181.
2011-02-12 16:26:10 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x49182.
2011-02-12 16:26:10 +0100: Deleting attribute 0x80 . File 0x49181.
2011-02-12 16:26:10 +0100: Deleting attribute 0x80 . File 0x49182.
2011-02-12 16:26:10 +0100: File "Thumb64Segment.data" does not contain data attribute
2011-02-12 16:26:10 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:26:10 +0100: Deleting attribute 0x80 . File 0x49183.
2011-02-12 16:26:10 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x49183.
2011-02-12 16:26:10 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x49185.
2011-02-12 16:26:10 +0100: Deleting attribute 0x80 . File 0x49185.
2011-02-12 16:26:10 +0100: File "ThumbJPGSegment.data" does not contain data attribute
2011-02-12 16:26:46 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b29e.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b29e.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b2a0.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b2a1.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b2a2.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b2a0.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b2a1.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b2a2.
2011-02-12 16:26:46 +0100: File "Thumb64Segment.data" does not contain data attribute
2011-02-12 16:26:46 +0100: Attribute 0x80 has AllocatedSize not multiple of frame size 65536.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b2a3.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b2a3.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b2a5.
2011-02-12 16:26:46 +0100: Deleting corrupt attribute list entry with type code 0x80 in file 0x8b2a6.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b2a5.
2011-02-12 16:26:46 +0100: Deleting attribute 0x80 . File 0x8b2a6.
2011-02-12 16:26:46 +0100: File "ThumbJPGSegment.data" does not contain data attribute
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183ba.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183bd.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183c1.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183c6.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183ca.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183ce.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x183da.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x18a8c.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x18a8d.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x1b1af.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x1b3f5.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x1b3f8.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x1b43c.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x48b3f.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x49181.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x49182.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x49185.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x8b2a0.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x8b2a1.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x8b2a2.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x8b2a5.
2011-02-12 16:26:58 +0100: Deleting orphan record 0x8b2a6.
2011-02-12 16:26:58 +0100: 94.88 Gb in 569132 files
2011-02-12 16:26:58 +0100: 0 Kb in 0 directories
2011-02-12 16:26:58 +0100: 0 Kb in bad blocks in 0 fragments
2011-02-12 16:26:58 +0100: 125388 Kb in use by the system
2011-02-12 16:26:58 +0100: 0 Kb occupied by the log file
2011-02-12 16:26:58 +0100: 4096 bytes in each allocation unit
2011-02-12 16:26:58 +0100: 61049000 total allocation units on volume
2011-02-12 16:26:58 +0100: 0 allocation units available on volume
2011-02-12 16:26:58 +0100: Errors were found but not fixed 'cause read-only.
2011-02-12 16:26:58 +0100:
2011-02-12 16:27:02 +0100: Repair tool completed:
I'm sorry to hear about that. I believe that Repair Disk is intended to repair Mac disks only. If you look in the help for Disk Utility, it says that you can't repair write-protected disks. OS X can't natively write to NTFS, but the drive itself isn't locked, which is, I imagine, where the problem was.
You could try to use a data recovery program to get as much data back as you can.