If you're booting from an external SSD, the internal drive is now "just another drive" insofar as the Mac OS is concerned.
It will behave the same as any other drive you might have plugged in and used.
What I did after I set up an "external SSD booter":
1. I partitioned my internal drive
2. First partition is the size of the SSD
3. Other partition (or more than one of them) can be whatever size you require.
4. I then used CarbonCopyCloner to "clone back" my OS from the SSD to the first partition.
WHY I did this:
I now have an immediately-accessible SECOND COPY of my OS and boot drive.
If I have any problems with the external boot SSD, I can just "switch boot back" to the internal drive.
It will boot right up in a few moments, just as before.
The remaining space on the other partition(s) can be used for whatever needed.
For example, if your movies folder gets too big -- move it back to the internal drive. You "don't need speed" for just storing this stuff. Just "room".