I know this isn't Terminal commands per se, but I thought I'd add my 2 cents...
I like to run the above cron commands and then some...
Then I run Disk Utility : Repair Permissions
I reboot in single user mode and do /sbin/fsk-y
Then I Start from an external or other hard drive and run
Disk Utility: Repair Disk
Then Disk Warrior 3.0.2 from the external disk or from the cd
Then Symantec 3.0.2 volume structures repair and defrag and/or
Techtool Pro 4.0 volume repair and defrag and/or
Drive 10 1.15 volume repair and defrag and/or
Intec Software SpeedTools X : Disk Defrag
The combination of Diskwarrior Directory Optimization and the repair of volume structures and disk optimization for file and ddisk defrag has proven to have been a terrific maintenance and repair routine for me.
The key is having an external or secondary internal drive to boot from.
It gives tremendous utility and capability to these programs that are unavailable if booted from the main drive. Also allows for quick, easy reliable and even bootable backups using (example

Carbon Copy Cloner 2.3 (OS X 10.2 and 10.3) or Prosoft Engineering Data Backup 2.0.3
Even a new large iPod can make a great external bootable portable drive to help support many different Macs.
Using something like Disk Inventory X or even just the search/find utility in the Finder to search for files larger than xxxxMb to help locate old unused hard drive space hogs and delete them.
Whenever possible to save drive space I like to throw away mulitple versions of help files in other languages. Or downloaded software update packages that seem to pile up. The download folder in SpeedDownload comes to mind...
While viruses aren't that prevalent on the Mac, Virex and Norton/Symantec AntVirus certainly can't hurt and are a good practiced to use when acanning downloaded files from the internet. StuffiDeluxe has a setting that can do it automatically using a virus program you specify in preferences.
I try to leave my Macs running almost all of the time, occassionally rebooting only if there is trouble or when required by a software install or update.
Just some thoughts
Regards -joe40-