I see where the logic of that is. The thing is, I'm pretty sure that the lines on the bezel around the screen aren't the source of the cracking. The source is that the plastic where it cracks is just too darn thin. If you take the palmrest area off, you can break those pieces off with your fingers quite easily.
EDIT: In your punch analogy, you're using a pillow to disperse moving force. You're right in that the silicone skin would dissipate the force of those lines when they contact the palmrest at the moment of closing. However, say the same dude decides he's going to hold you against a wall with his fist a specific distance away from the wall, no matter what. Suddenly, you don't want the pillow there as removing it would give you more breathing space (less pressure).
You'd be dissipating pressure for an instant and then increasing it over the duration of time the MacBook is closed. This isn't necessarily bad, as it won't be enough pressure to do anything detrimental. But it won't be alleviating the cracking issue either (nor will it be making it worse).