Well, considering that many of the web-based applications that I use for doing my job use java, disabling it really isn't a good option. I guess it's back to Windows, or ignore this problem until Apple gets off their butts to fix it.
Of course, Apple knows best, and believes that Java and Flash are not required for users of the Internet. Hell, they still haven't figured out the importance of more than one damn mouse button! Using two hands to do what should be a one hand task just is nonsense.
-jt2