NO, you must power the card properly.
No need a powerful PSU, you may tap power from SATA port etc. All aux power pin must be connected. Just to flash it, the card won't draw much power. However, you need to make sure all pins are powered in order to make sure the card can runction normally.
You may even put you Mac right next to the PC, and use your cMP to power the 6800's aux pins.