This is disappointing - Qualcomm are a bunch of blood-sucking vampires. It seems that Intel wasn't able to build a 5G chip quickly enough, so Apple was essentially forced to source from them again.
The good thing is that this isn't the biggest threat to Qualcomm. Apple is a commercial company and can be coerced to deal with bad actors by market demands (like the need to ship a 5G phone, and Intel's inability to do so), similar to how property developers in NYC were coerced in to paying off the mob. It
does not mean that Qualcomm's business practices are not monopolistic or illegal.
That will be decided by the FTC suit. No settlement with Apple can change that. That trial included absolutely devastating testimony from all of Qualcomm's licensees, and we're just waiting for the judge's ruling.
One thing that emerged in the trial was that Qualcomm has been spending a lot of money on internet trolls and 'fake news' to try and shape public perception against the FTC, as well as lobbying the Trump administration to pressure the FTC to drop the suit on 'national security' grounds (lol). So be careful with whatever pro-Qualcomm puff-pieces you read online.
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Apple is better at intel when it comes to designing CPUs. Why wouldn’t they be better at designing baseband chips?
Designing a baseband chip is a very large undertaking. Apple didn't start from scratch with their CPUs - they acquired PA Semi, which had lots of experience designing ARM CPUs, and iterated from there. The ARM licensing model itself was also a unique factor that allowed them to very quickly get up-to-speed. There isn't really an equivalent model for baseband chips - there is no small company to acquire IP and engineers from, and the competition is too far along for an iterative approach to be acceptable to customers. Then you need to test the chip in all kinds of network conditions, and keep up to date with emerging network standards (5G and 6G after that, etc).
The most likely thing is that Apple will acquire Intel's baseband division. That will be their 'PA Semi'. They will have to be strictly compartmentalised from the team that works with Qualcomm to avoid allegations of leaking confidential information.
Also, all of that is very expensive. Apple don't sell their chips to 3rd parties, so they would have to recoup the costs (and ongoing development costs) just from their own sales. It might be better for them to create an independent but wholly-owned subsidiary.