After Effects is miles ahead anyway.
You have obviously never done any visual effects compositing.
I've been using After Effects nearly every single day since version 3.1, but even today it continues to be very klunky and kludgy for VFX work. Not to say that it can't be done in AE, but Shake was designed from the ground up as a dedicated compositing app, so it's much faster, logical and manageable than AE when setting up complex composites.
There is a reason why Shake is still the de facto standard desktop compositing app in most visual effects houses, even today (although Nuke is quickly replacing it, due to Apple's inactivity towards the alleged "Shake replacement")