Really? I always thought that was bad for the battery?
Modern batteries have wildly different chemical make-up than old batteries. But even lead-acid batteries and NiCD's will lose usable capacity when discharged deep. Modern chargers are very intelligent. Often they consist of a tiny microcontroller in the battery with a bunch of sensors, communicating with the charger, a microcontroller itself, in the host. They track a great number of parameters regarding the battery, trying to optimize performance and even adapting to the way you use your equipment. Trusting this technology is safer than trying to second-guess batterymakers.