Found a Solution
So I was having the same problems, once I updated to the newest Winterboard I couldnt change my Themes at all, it wouldnt even auto respring. I looked to see if I could find a fix but it was futile so I decided before going thru the hassle of Restoring I would try to DG Winterboard.
I found this super easy simple solution:
1) I got version Winterboard_0.9.3210-1 here:
http://uploading.com/files/get/m97b25e3/
That is a version 1 under the New iOS5 Winterboards, you might be able to find the 0.9.3211-1 with Google but this version works fine with my iPhone 4- 4.3.3.
2) After DL the file you have to get an SSH Program, I use WinSCP, if you need help getting that program or instructions just Google it there are tons of sites about it.
3) Simply SSH into:
var/ root/ media/ Cydia ( if no Cydia folder create one)/ AutoInstall ( create also ). Then drag n drop the winterboard .deb file into AutoInstall. Reboot phone, then respring and winterboard should be installed.
I didnt even have to uninstall the Current Version of Winterboard just drop the .deb file and reboot and boom my Winterboard was DG and everything was working just fine.
Hope this helps!!!
Signed up for this Forum just to let yall know cuz its annoying to search and not find a solution or when people ignore you. Neway Good Luck and God Bless!!!