Through a series of rather unfortunate mistakes, I managed to do a secure delete of the trash with Apps folder and its contents all in the trash. Panic ensued. I had very recently backed up my computer and was able to restore the folder and programs. Since then, whenever I open something from the apps folder that is also always in my dock (EndNote, for instance), a second icon appears on the dock. One of the icons has the little blue indicator light below it, and the other does not. I've attached a screen shot
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have tried using the "Remove from Dock" thing and then opening the the app and selecting "Keep in Dock," but that does not correct the problem.
Also, when iCal pops up with a new reminder, a second icon appears, but when I open iCal from the Apps folder, the program opens from the icon already on the dock. I don't know if any other programs are doing this.
Any ideas how to fix this? I know its not a huge deal, but it's driving me crazy! In case it's important, I'm using an Macbook Air with OS X 10.7.5.
Thank, Jami

have tried using the "Remove from Dock" thing and then opening the the app and selecting "Keep in Dock," but that does not correct the problem.
Also, when iCal pops up with a new reminder, a second icon appears, but when I open iCal from the Apps folder, the program opens from the icon already on the dock. I don't know if any other programs are doing this.
Any ideas how to fix this? I know its not a huge deal, but it's driving me crazy! In case it's important, I'm using an Macbook Air with OS X 10.7.5.
Thank, Jami