So you'd need a chip that has more lanes? Or is it also MOBO design?
I was talking about thunderbolt
peripherals e.g. hubs and docks. Inside a dock you've only got the 2 lanes of PCIe extracted from the thunderbolt 'in' to drive whatever USB, ethernet, sound controllers the dock contains
and feed any device connected to the thunderbolt-through port. I'm not sure whether it would be
technically possible to include a second TB3 controller in the dock to drive extra thunderbolt ports - but if so, it would be a thoroughly gimped TB3 port and not a sensible thing to do.
Thing is, with USB 3 giving 5Gbps (and USB 3.1gen2 10Gbps) sensible people are only going to pay the premium for Thunderbolt for peripherals that really, really need the full bandwidth of Thunderbolt - so a gimped, limited bandwidth Thunderbolt port is about as much use as a chocolate teapot.
Within a Mac, however (which obviously does have two TB3 controllers) - yeah, its partly a case of how many PCIe lanes you have: hence, the 13" MBP with its ultra-low-power processor doesn't have enough lanes to drive all 4 of its TB3 ports at full capacity - the 15" does.
The ideal "transition" MBP would have just featured a pair of TB3 ports as a drop-in replacement for the existing TB2 ports, and kept all the others. Yeah, we'd have to buy new video dongles, but at least we wouldn't need new
everything dongles. Remember all those people on this site complaining that the rMBP didn't have enough thunderbolt ports? Me neither.