I've never gotten what I consider to be outstanding performance with any OCR/ICR software that does most or all of its processing on the computer (as opposed to some scanners that perform at least a portion of the preprocessing/processing on its own dedicated hardware and have an OCR App integrated with the Maker of that product's software.) The preprocessing stages have been universally slow with the different programs I've used. I'm not sure about FR Pro, but with the standard FR for Mac, you can disable image enhancement but you cannot disable individual aspects of it like you can with some other programs. (Even if the Pro version has this feature, modifications to such settings can obviously affect recognition accuracy.)
Does FineReader Pro use 300+ DPI grayscale TIFFs by default? (IIRC this is still considered the ideal for working OCR/ICR, even though the initial files are massive and it definitely makes things slower.) With another program I used, scanning BW at a lower resolution did speed the process, but at the expense of dropping any lighter text/printing at a certain threshold.)
The version of FineReader I have does not have this feature, but the more recent version of FR Pro may have a batch processing setting that allows the OCR tasks to be performed in the background so you can scan more documents faster. However, I can't say how much this will affect the preprocessing stage with this particular App (but, with TeleForm, this makes a very big difference.)