You have to individually select the episodes instead of letting it auto select the title. Just use the drop down in the title spot to select each episode (each file that is about 40min should be an episode) and then change the file name with each selection, add it to the queue, and do the same thing with the next episode. Then in the queue just hit encode videos. I have done this with all my friends DVDs, and it works great, creates a separate file for each episode, which is also much nicer than one long string of them.