If history plays a part then "probably" would be the answer.
Historically Apple will switch to rev 2 (3, 4, whatever) parts once the REP (repair extension program) starts. That's a big part of what delays the REP from launching when issues come to light. Apple needs to figure out the logistics of the program, the money trail (do they pick up the tab, or does the component manufacturer), the fix, legal, etc. More than likely the logic board Apple part number is the same but the manufacturing part number has been raised due to some sort of revision in the manufacturing process.
With that said... A lot of this issue, and many related issues throughout the industry, comes back to lead free solder. While being a more environmentally friendly option, it doesn't seem to hold up under heat as well as leaded solder.