I hope you don't actually need to do ANY migration this time.
You did say that your wife's account is also affected to some degree, so it may not be a problem with your user files and data, but is system-wide
What I would suggest is to simply reinstall OS X.
It will install on top of what you have - resetting some parts of your system, hopefully those system files that are affecting your user accounts will be fixed as a result of that reinstall.
You are not erasing your hard drive, just reinstalling OS X.
The reinstall should not affect your own files.
So, in that case you would not need to migrate anything this time, just reinstalling the system. Your data remains in place on the hard drive.
And, you would test your system after the reinstall to see if your problem is gone.