My powered USB/Firewire Hub charges my iPad, but a bit slower than a full powered USB port.
It gives the "Not Charging" message in the status bar, but if you lock the iPad and walk away, it charges about 10% per hour.
I plug it in when I go to bed, and by the morning when I get around to using it again its at 100% unless I started out at an extremely low number.
Yeah I forgot about that, I remember seeing an iPad-in-dash build where a guy said even though it said "not charging", it would stay at 100%, and if he took it out for a while and used it, and put it back in, it would be at 100% again eventually (he was using some sort of USB amplifier that pulled the audio off of the iPad, which was feeding regular 5v 500mA).
I still don't think that's the ideal solution though, I hope someone does figure out a way to "fast charge" the device.
Someone mentioned that Asus software, it will probably only work on Asus motherboard by tweaking the USB power output, I'd be cautious of using it on anything else, even if it works you might damage something on your motherboard (Not always good to force something to do what it's not designed to!)
Now that you mention it though, I seem to recall settings on my MSi Motherbard BIOS that would allow me to increase power to the integrated USB ports, I'll have to check that out, the OP should too (unless he's using a Mac or a store bought PC, in which case those types of settings will be locked out)