They don't give you a choice anymore. They have enhanced the new boot camp process. In the past you used to have to partition the drive and go through a variety of steps to install windows and the drivers. It was very manual. Now once you partition the drive Apple automatically reboots into Windows and installs the drivers. If you uninstall the Intel driver Windows recognizes it and immediately downloads the updated driver. The interesting thing is if I boot into Safe Mode the flickering issue goes away. I believe it is a driver issue.
UPDATE: I turned off the internet on my computer and uninstalled/deleted the Intel Graphics Driver from my computer. The flickering has officially stopped. The downside to this is the icon and font sizes are all over the place. Once I rebooted my computer, Windows reconnected to the internet, downloaded the Intel Driver and the flickering started again. It is definitely a driver issue!