The percentages displayed by the two bar graphs are calculated as follows, taking the screenshot you posted as reference:
First one = Current charge / Full charge capacity = 6641 / 8684 * 100 = 76.5%
Second one = Full charge capacity / Design capacity = 8684 / 8790 * 100 = 98.8%
Hope this makes it clear. The graphs should be labelled charge % and health by CoconutBattery. They don't correspond to any single mAh number, rather to the ratios of the mAh numbers as explained in the above formulae.