So I did a clean install recently and I tried to use Migration Assistant to copy all my files over. Through Time Machine, Migration assistant only copied ~640 MB (mostly apps). I manually copied the rest of my user data from Time Machine. Is there any way to either: a) get Migration Assistant to actually copy everything from my computer pre-wipe b) Use my Time Machine backup as if there was no re-install and just restore everything I had. The two main issues I have with what is copied currently are: 1) various user settings were not copied. My Mac is now like it was out of the box software wise (for example, the default doc apps are in the doc) 2) Some applications such as MS Office no longer work. The have the generic "Application" icon in Finder and when I try to launch them, Finder says they "quit unexpectedly". iLife is messed up as well. Garageband is absent and iPhoto is corrupt. Any help?