Mouse speed in games differs to desktop

Anyone notice that if you are running the desktop resolution at "best for retina"
and you run games at max res, that there is a huge difference in mouse speeds

My mouse feels much snappier on desktop and when i load a game it feels slow and sluggish, once i get used to it in the game its not so bad, but then when i close them game it feels like lightning fast

I would have thought that the speed would have scaled with active resolution but it doesn't

Does anyone know of or have a fix that would make it scale properly?

This applies to both touchpad and external mouse but if it helps I'm using a logitech mx revolution

Edit, i can make profiles for differen buttons to work differently in different apps, if only i could do the same for the mouse speed!

 

The main games i play at the moment are WoW and HoN, can't alter speed in either