It has been said many times in this thread but I feel that it has to be said again. If you and the person who wrote this macrumors article, had read the original source article properly, you would understand that this is not the case.
In 99% of cases, saving a web page to your homescreen will simply create a bookmark that will open that URL in safari. It does not launch a special application that has been purposefully made inferior.
Did you read the original article in the Register? It says nothing of the kind. The very first line of the Register article states:
Apple's iOS mobile operating system runs web applications at significantly slower speeds when they're launched from the iPhone or iPad home screen in "full-screen mode" as opposed to in the Apple Safari browser
It doesn't say "half", or "some" or "1%"... That is an UNQUALIFIED statement that is neither contradicted nor qualified by ANYTHING in the remainder of the article. You may be correct that this only affects 1% of all cases, and in fact I certainly hope that you are, but that's simply not stated in the original article.