The iMac Retina comes with a PCIe SSD stock - in the form of the "Fusion Drive" - a small SSD [/i]plus[/i] a spinning hard drive. You can upgrade to a larger Fusion Drive (which increases the size of the spinning hard drive,) or upgrade to flash-only storage (which removes the spinning hard drive and increases the size of the SSD.)
Either way, it has a PCIe SSD in it, which could theoretically be upgraded later.