I prefer to have everything on one page. It was all messes up but because you posted this thread I organised all my apps again.
But I don't really care now because I rarely touch my ipod after getting my OPO.
I only have one page (the first page is just a blank one so I can see the wallpaper better). The apple folder holds all of the stock apps and everything else usually goes in the extras folder. My iPhone is laid out in a very similar way.