This happened to my clock app, the other day. I don't use the clock much, so I didn't notice it until a few days after I installed Eclipse, enabled it, immediately turned it off and removed it. I don't know if Eclipse caused it, but that is my guess. To fix it, I ended up turning on a patch in Flex 2 to tint the statusbar color for the clock. After that, I was able to turn the patch off and the clock statusbar went back to normal.
And I am not using StatusBarFix2. I use a file renaming method that is probably much less safe.