well, i had some serious permissions problems with my second Leopard install, and the solution was to install Tiger. I think ACL is broken in Leopard.
I tried erase/install of Leopard and the permissions problems kept coming back almost like a virus. I had music files on an external drive that got wonky permissions from the boot drive (the "custom access" bug you may have read about), and when I connected the external drive to a Tiger machine it was like there no problems. So I wiped the Leopard drive and did a completely fresh install. New account and everything. Zeroed out the drive, even. Well, everything was fine until I attached that external drive again, and then the boot drive permissions went awry again. I ended up copying all of the files from the external drive to a Tiger machine, formatting the external drive and then putting the files back on from the Tiger install. I read a little bit about ACLs in Leopard, and I'm pretty sure they started the problem. Tiger ignores that stuff, which is why things were fine with Tiger.
Now I don't ever click anything that says "permissions" in Leopard so as to avoid the sticky ACL "custom access" bugs. Not even the drop-down triangle in "get info" boxes!