Folks, this thing uses the BCM5301X SoC according to iFixit's teardown. That chip provides support for USB 3.0. So, this means one of two things:
1) Either Apple's documentation is wrong. If someone can get their hands on one of these and actually test it, we'll know.
or, more likely...
2) The BCM5301 supports up to 3 PCIe 1x lanes *IF USB 3.0 ISN'T BEING USED*. Otherwise it only supports 2 lanes. So the USB 3.0 takes up one of those lanes. I'm guessing something about Apple's design, whether it be the HDD (time capsule) or what not, requires that 3rd lane. The same board/firmware/etc is probably shared between AE and TC, so if the TC doesn't have USB 3, neither will the AE.
And for those clowns who are saying this doesn't matter, you clearly haven't made extensive use of some of the TC's more general storage features. In the past this didn't matter because the SoC's used were so horridly bad at I/O that they either couldn't or barely could saturate USB 2.0. But with Broadcom's latest gen of 802.11AC chips thats no longer the case. Anything built with the BCM4708x or BCM5301x (such as this router) is going to be a *nice* upgrade all around, especially the ones that support USB 3 w/ a big and fast USB thumbdrive plugged in!