They haven't jacked the prices up, the just re-organized the refurb/clearance section into one with just a divider on the page to separate them. I can confirm I just ordered a refurb base MBP, previous gen for $1349. The issue is most of the refurb MBPs are not in stock. I spoke with an Apple rep earlier who told me they'd had tons of orders for the refurb MBP 15 inchers and they were simply out of stock for the time being.
I've been seeing them come in and out of stock the last couple of hours, but they don't last.
I did the same freak out when I realized maybe I'd waited a day too long, but fear not. Just keep watching.