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Obviously you guys have never built custom rigs before. The USB spacing on desktop motherboards is even worse.
If apple had to choose sacrificing a bit of battery life over USB spacing, I think we can all agree on which to choose.
How other computers are built is completely irrelevant. If Apple used that logic we would be using systems with design features from winners like Dell, HP, and Samsung. No other laptop has the design features of the MBP and it is in a unique class of its own. For the most part, updates correspond to user needs, which is a large reason it is the laptop with the highest return customer rate and the laptop with the best user review ratings of all laptops. Look at other maker's trackpads for examples...it is an utter and total failure.
The spacing of the USB ports is an issue as people find it problematic, myself included. And if your work requires you use 2 USB devices simultaneously, you may not choose battery life.
If it problematic enough to not buy a MBP at all? Of course not, but it is still frustrating. Two USB ports in themselves is somewhat frustrating, even though fitting another in their would be difficult. It seems Apple is attempting to skip over this issue with ThunderBolt given its potential capability in powering many devices at once.