Quick update to this thread. FINALLY, 1.1.1 totally nailed this one. It was fun navigating to my old "test" page and having the iPhone tell that exploit to "talk to the hand", and do exactly what it is supposed to do. Cool beans.
Hm? I don't remember it affecting BeeJive at all. Duck Hunt... Bejeweled... MoviesApp... OneTrip... no, they all seem to be working fine. Maybe you need to run a restore on your phone? Maybe "sync bookmarks" isn't checked in iTunes...