I think you're mixing things up quite a bit here. Either that or I don't really understand what you're trying to say. APFS and High Sierra are not synonymous - High Sierra can easily run off of HFS+ partitions as well. And since APFS is only supported for SSDs in High Sierra the installer is never going to attempt to put APFS on your iMacs Fusion Drive simply because it isn't supported yet. This means that when attempting to install High Sierra on a Fusion Drive or regular hard disk drive the volume is NOT converted to APFS but remains formatted as HFS+ (Mac OS Extended (Journaled)). Case in point: my iMac with FD is running High Sierra on a regular HFS+ volume while my 12" MacBook is running High Sierra on an APFS volume.
With Mojave, this is going to change. HFS+ is no longer supported in 10.14 at all, which means that EVERY SINGLE DRIVE - be that SSD, Fusion Drive, or HDD - is going to get converted to APFS whether you like it or not. And unlike in High Sierra the undocumented switch to prevent this from happening no longer seems to be working. Thus, there is no way to run 10.14 off an HFS+ drive.
In other words: waiting for Mojave will get your drives converted to APFS for sure, and there doesn't seem to be a way to opt out. Installing High Sierra, on the other hand, is not going to f*** up your file system but leave everything as is.