The 13" rMBPs don't have a faster CPU. They do have a better GPU and a better display, at the cost of less battery time and slightly increased weight.
The 13" MacBook Airs come with a 1.3 GHz Core i5 that turbo boosts to 2.6 GHz. The 13" rMBPs come with a 2.4 GHz to 2.6 GHz Core i5 that turbo boosts to 2.9 or 3.1 GHz.
Granted in the real world that's probably not much. Geekbench scores for the two suggest the rMBP outperforms the MBA by only a few hundred points.
But it's there, however slight.