Well most Xeon E5 V2 processors that are in the Mac Pro have 4 channels of ram, the difference with the old Mac Pro. Those had 3 channel but channel 3 and 4 used the same bus!
However since the E5 has 4 channels! it does not matter if you put the rams in one side! Each slot is a channel! you would be using 2 out of 4. Tt would have been better to purchase 4X8GB sticks! you still get 32GB but you use the max potential of the CPU.