This worries me. If the bean counters are coming in early to guide the process of innovation, it's does not bode well for new products. Apple has a reputation for not only pushing the envelope, but defining the envelope. From iPod to iPhone to iPad to MacBook Air; they all literally redefined the relative industry they entered, leaving the rest to figure a way to catch up. iPod was not the first MP3 player, but when iPod came out, everyone else ended up going "Oh, THAT's what it's supposed to be." Ditto smart phones. Smart phones were already popular, but when the iPhone was released, the industry could only sigh heavily and scramble to match it. For over a year people were expressing their desire for Apple to enter the netbook market. Instead, they all but decimated the netbook market by redefining the tablet AND the ultra-portable via iPad and MBA.
Priority needs to remain on innovation, no matter what other changes Cook makes with how Apple operates in general. If they are rbinging in the project management and supply management executives in early, it needs to be with the intent to define how they meet the needs of the engineers, not to tell the engineers what is possible. Innovation concentrates on making the not-possible into the possible.