Reading through this thread, I noticed your comments about the -advmethods and realised you are suffering from a common misconception.
This flag means that you are prepared to take late beta units, it is not a -gromacs flag!
Late betas are proteins that have been through Stanford's internal testing and have had provisional testing by the external beta testers, but may still have undiscovered problems i.e. this flag says "I am willing to try less stable units" For the last year or so, this flag normally meant that you get Gromacs as that was the latest core, but it is not a guarantee
(There was even talk of getting new Genome cores with this flag before that project was unexpectedly terminated)
The recent recalculation of scoring for Tinkers means they are now actually preferable (in most cases) for WIntel based systems - I'm not sure how the PPD rates work out on Macs.
Ultimately, Stanford will hand out work they want doing, not necessarily those units that score at the fastest rate. If everyone specifies -advmethods (as they appear to be doing) I suspect that the flag will eventually get ignored altogether
This flag means that you are prepared to take late beta units, it is not a -gromacs flag!
Late betas are proteins that have been through Stanford's internal testing and have had provisional testing by the external beta testers, but may still have undiscovered problems i.e. this flag says "I am willing to try less stable units" For the last year or so, this flag normally meant that you get Gromacs as that was the latest core, but it is not a guarantee
(There was even talk of getting new Genome cores with this flag before that project was unexpectedly terminated)
The recent recalculation of scoring for Tinkers means they are now actually preferable (in most cases) for WIntel based systems - I'm not sure how the PPD rates work out on Macs.
Ultimately, Stanford will hand out work they want doing, not necessarily those units that score at the fastest rate. If everyone specifies -advmethods (as they appear to be doing) I suspect that the flag will eventually get ignored altogether