I have the same video card and couldn't imagine that it wouldn't work just because of mac firmware. At the very least it would have booted when the drivers loaded. So its good that its fixed. As for the upgrade i made a good
Writeup on the method and tools that i used.
You can go De-lidded if you want but dont forget that its
not required; I also wouldn't be surprised if your CPU temps were lower with the lidded versions.
If you want to use lidded CPUs and save $400 then you can follow my post exactly and be just fine. If you use washers your raising the CPU by the same hight that the lids added. So the risk of crushing the pins is alot lower.
Another tip that i used to upgrade both units is to simply hand tighten all bolts until it stops moving using no force. Then once i do with with all the heat sync bolts ill give them all 1/4 a turn. CPA didnt need more than this, but CPU B did need another 1/8th on one of my units and on the other CPA needed 1/8th more and CPU B needed another 1/4th. So it does vary.
You really shouldn't need anymore than 1/2 extra turns on the bolts. So if you cant get it to boot, its best to start over by loosing them all and re-tightening them down. An overly tightened bolt will cause it to not boot as much as a loose bolt so keep that in mind when upgrading. You looking for that sweet spot.